glsl 'problem'

I'm just starting glsl(From cg, so not madly different, but different enough)
and basically I'm not sure why but i can't access anything other than the first binded texture.

this code below generates a vertex/pixel shader based on spec,

'ShaderGEN V0.1
'
'A system designed to generate shaders to replicate
'gl's fixed function functionality.

Type ShaderGen

	Method NewShader(name:String)
	
		Local vertFile:String = name+"Vert.glsl"
		Local pixFile:String = name+"Pix.glsl"
		vfile=WriteFile(vertfile)
		pfile=WriteFile(pixfile)
		useLights=0
			
	End Method
	
	Method GenLights()
		useLights=True
	End Method
	
	Method addTexture( blendMode )
		
		texblend[texnum]=blendmode
		texnum:+1	
		useTextures=1
		
	End Method
	
	Method genPPLights()
		useppLights=True
	End Method
	
	Method Generate()
		
		If useTextures
		
			For Local j=1 To TexNum
				WriteLine vfile,"varying vec2 texCoord"+j+";"
			Next
		EndIf
			writeHeader(vfile)
			writeVertexTForm()
			If useTextures
				
				For Local j=1 To texNum 
					WriteLine vfile,"texCoord"+j+"= vec2(gl_MultiTexCoord"+(j-1)+");"
				Next
								
			EndIf
			
			writeEnd(vfile)
			
			Local pixOut:String = "gl_FragColor = "
			
			If useTextures
			
				
			
				For Local j=1 To TexNum
					WriteLine pfile,"varying vec2 texCoord"+j+";"
					WriteLine pfile,"uniform sampler2D cTexture"+j+";"
					If j>1
						Select texblend[j-1]
							
							Case T_Normal
								pixOut="gl_FragColor = "
							Case T_ADD
								pixOut=pixOut+"+"
							Case T_Modulated
								pixOut=pixOut+"*"
							Case T_Subtract
								pixOut=pixOut+"-"
							Default
								Throw "Undefined texture blending mode."
						End Select
						
					EndIf
					
					pixOut=pixOut+"texture2D(cTexture"+j+",texCoord"+J+")"
				
				Next
				
				pixOut=pixOut+";"
			
			EndIf
			
			writeHeader(pfile)
			WriteLine pfile,pixout
			writeend(pfile)
							
		
		CloseFile vfile
		CloseFile pfile
				
	End Method
	
	Method writeVertexTForm()
	
		WriteLine vfile,"gl_Position = gl_ModelViewProjectionMatrix * gl_Vertex;"
	
	End Method
	
	
	Method writeHeader(file)
		WriteLine file,"void main()"
		WriteLine file,"{"
	End Method
	Method writeEnd(file)
		WriteLine file,"}"
	End Method
		
	Field useLights,useTextures
	Field usePPLights,texNum
	Field vfile,pfile	
	Field texBlend:Int[32]
	Field dred!,dgreen!,dblue!
	Field sred!,sgreen!,sblue!
		
End Type

vert shader it outputed

void main()
{
gl_position = gl_ModelViewProjectionMatrix * gl_Vertex;
}

varying vec2 texCoord1;
uniform sampler2D cTexture1;
varying vec2 texCoord2;
uniform sampler2D cTexture2;
void main()
{
gl_FragColor = texture2D(cTexture1,texCoord1)+texture2D(cTexture2,texCoord2);
}

only texture 2 appears to be texture 1 still..
is there a way to access texture handles through glstate in glsl?